rs29178800 SNP Detail

Summary

• ID
  rs29178800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111504132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA ACCGCGGAGT CTCGGCTCGG
  M
  GGCGGCTTGG CTCCCCGAGC TCAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38990116	mCV24937692	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss138696527	ENSMUSSNP4367834	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss324159941	CHEV_12_112775909	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29178800					SNP	C	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111504132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	403 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	318 bp upstream
Gm60631	predicted gene, 60631	821 bp downstream
Rr403512	regulatory region 403512	129 bp upstream
Tssr115317	transcription start site region 115317	1652 bp downstream
Tssr115318	transcription start site region 115318	1587 bp downstream
Tssr115319	transcription start site region 115319	493 bp downstream
Tssr115320	transcription start site region 115320	451 bp upstream
Tssr115321	transcription start site region 115321	566 bp upstream
Tssr115322	transcription start site region 115322	633 bp upstream
Tssr115323	transcription start site region 115323	771 bp upstream
Tssr115324	transcription start site region 115324	1087 bp upstream
Tssr115325	transcription start site region 115325	1121 bp upstream
Tssr115326	transcription start site region 115326	1736 bp upstream
Tssr117828	transcription start site region 117828	219 bp downstream
Tssr117829	transcription start site region 117829	881 bp downstream