rs29179396 SNP Detail

Summary

• ID
  rs29179396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATGGAAGA TTCAGATAAA CTACAGTTCA CACACCTGTG AGCATATTAG AGATGTTTCC
  AATGTTACTT ATGAAAGAGA CATTTATGTC GATGGGGAGA GGAAACAAGA TGTTTAAGCC
  TGTCTGCGAG GTAAACTTAA TGAACACAAA ACAAGCCCCA GCGTGGGAAG GGAGGCGACA
  CTTGAGCACC CACTGTGTGG CCAGCCCATC CAGGGTCTTA GGGTCCAAGT CATCTCTACC
  TCTTGTGCTT TAAAAACAAT TAATATGCAT TGTTACTTTT CAAAGAAAAG GGGTGTGTGT
  R
  GGTGTGGGGG GGGGTGTTAA GCTAGGGTAC CTTTTTCAAC CTCCAGGTTA ACAATGAAAG
  CAAGATCCTA AATTCTGAGA GTGAGGAAAG AATTAGGGAC CTAAGCCCCC TGCCAGTCTC
  CAGGCTCTAG GAAAGACCAG CAGCTCCCCC ACCAGGATGC TCACGCTTTG GTGAGAGATG
  TTCTGTCTGC AGGGGCTAGA GGCTGCTGGA AGCCAGGTGC TGCTCAGGAG GTGGGGTTGG
  GGAGCTGCTT GCTGTGTGCA TGGTGGCTCA CTGCAGAACA GGACAGCTAT AAAGACAACA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38991945	mCV23148365	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss138689930	ENSMUSSNP6939024	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29179396					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342547 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	591 bp distal
Rr472875	regulatory region 472875	351 bp proximal
Rr472876	regulatory region 472876	634 bp proximal
Rr472877	regulatory region 472877	1681 bp proximal
Rr472878	regulatory region 472878	1745 bp proximal
Rr472879	regulatory region 472879	1825 bp proximal
Tssr115196	transcription start site region 115196	596 bp downstream