rs29179986 SNP Detail

Summary

• ID
  rs29179986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:70182894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT CACCTCTGGA ACCTTGAACT
  Y
  TGAAATTCCA CCCTGCCCTG GGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38997733	mCV22299134	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss47142748	NES11254364	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	T	T	C		T	C	T	T		T
ss137862759	ENSMUSSNP5632920	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss324086843	CHEV_12_71237107	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29179986					SNP	C	C	T	C	T	C	T	C	C	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47142748	NES11254364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:70182894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4707	CpG island 4707	1251 bp distal
Gm56526	predicted gene, 56526	within coordinates
Rr403332	regulatory region 403332	244 bp upstream
Rr467201	regulatory region 467201	within coordinates
Rr467202	regulatory region 467202	169 bp proximal
Tssr116556	transcription start site region 116556	141 bp downstream