rs29180777 SNP Detail

Summary

• ID
  rs29180777
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27386191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGAACAC AAGCTGGGTG AAGAGAAATG GGATCGAGGG
  CCCTTTGTCA ATATCCATTT GATCAAAATT CTTTTTACGC TATGTCTTGA TTATTTCCAG
  K
  CGTTCTGTTT TTGAAGGGGA GGGGAATGTA ATGTGCCTAC TAAACTTAAG TGTCACGTTT
  TTTTTTGTTG TTGTTTTTTT TTTTAAAATC TCTTTGAGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38998055	mCV22641549	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss137464403	ENSMUSSNP6416507	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29180777					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27386191 () rs orientation: forward

Symbol	Name	Function Class
Rr464224	regulatory region 464224	40 bp distal
Rr464225	regulatory region 464225	720 bp proximal
Rr464226	regulatory region 464226	1602 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	21 bp upstream
Tssr113043	transcription start site region 113043	177 bp upstream
Tssr115960	transcription start site region 115960	1413 bp upstream
Tssr115961	transcription start site region 115961	1048 bp upstream
Tssr115962	transcription start site region 115962	607 bp upstream
Tssr115963	transcription start site region 115963	128 bp upstream
Tssr115964	transcription start site region 115964	212 bp downstream
Tssr115965	transcription start site region 115965	275 bp downstream
Tssr115966	transcription start site region 115966	364 bp downstream
Tssr115967	transcription start site region 115967	636 bp downstream
Tssr115968	transcription start site region 115968	650 bp downstream
Tssr115969	transcription start site region 115969	727 bp downstream
Tssr115970	transcription start site region 115970	752 bp downstream
Tssr115971	transcription start site region 115971	795 bp downstream
Tssr115972	transcription start site region 115972	929 bp downstream
Tssr115973	transcription start site region 115973	1295 bp downstream
Tssr115974	transcription start site region 115974	1343 bp downstream
Tssr115975	transcription start site region 115975	1383 bp downstream
Tssr115976	transcription start site region 115976	1405 bp downstream
Tssr115977	transcription start site region 115977	1419 bp downstream