rs29181547 SNP Detail

Summary

• ID
  rs29181547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAAATAGGT AAAACACACA CACACACACA CACACACACA CACACACACA CACACACTAG
  AAAACACAGA AAACCCTGAC CTATATTTTT CATGAGACAA AGTGTGTCTC AGTTGAATTA
  TAATGACCTA ACTAAAGTAT GAACATCTTT TGTGAGTAAA TACCCCAAAT TCCAGTTCCT
  TAGAAAATTT TTAGTATTAA TATAAGCACC AAAAAAAACC CCAAACAAAA GCAAATAAAA
  CAAAGAAGGA ACAGAACCAA AATCCACCAA GTCCTAAAAA TAGACTCAGA AGCAAAGTTT
  Y
  TGAGATACTT AATGAGGTCT GACTTCCCGG GGCCCTCTAG CGGCCACAGT GGAACTGCAG
  GGGAGTTCAG TTTGTTGGAC AGAACAAAAT TTTCCATGGC TTTACTCTTT GATAGGAAAT
  TATTTTCCAA GCAGTGAGGC ACTGTCTAGG CTTAATAACC TCATGCAATG CTTCCACAGG
  AAGATTTTGG CTAGTTCACA TTCTGTCTTT TGCCTTTTTG GTGTAAAGAA GGAACTGTTT
  TTGGTTTTGT TTTTGTTATT TTTGTTTTTT TTTTTTTTGT TTTGTTTTGT TTTGTTTTTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38997061	mCV24521353	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29181547					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494202 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	within coordinates
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	450 bp downstream
Tssr112999	transcription start site region 112999	385 bp downstream
Tssr113000	transcription start site region 113000	284 bp downstream
Tssr113001	transcription start site region 113001	183 bp upstream
Tssr113002	transcription start site region 113002	207 bp upstream
Tssr113003	transcription start site region 113003	282 bp upstream
Tssr113004	transcription start site region 113004	342 bp upstream
Tssr113005	transcription start site region 113005	368 bp upstream
Tssr113006	transcription start site region 113006	731 bp upstream
Tssr113007	transcription start site region 113007	815 bp upstream
Tssr113008	transcription start site region 113008	983 bp upstream
Tssr113009	transcription start site region 113009	1001 bp upstream
Tssr113010	transcription start site region 113010	1151 bp upstream
Tssr115902	transcription start site region 115902	1333 bp upstream
Tssr115903	transcription start site region 115903	1003 bp upstream
Tssr115904	transcription start site region 115904	979 bp upstream
Tssr115905	transcription start site region 115905	681 bp upstream
Tssr115906	transcription start site region 115906	561 bp upstream
Tssr115907	transcription start site region 115907	502 bp upstream
Tssr115908	transcription start site region 115908	458 bp upstream
Tssr115909	transcription start site region 115909	374 bp upstream
Tssr115910	transcription start site region 115910	320 bp upstream
Tssr115911	transcription start site region 115911	272 bp upstream
Tssr115912	transcription start site region 115912	258 bp upstream
Tssr115913	transcription start site region 115913	223 bp upstream
Tssr115914	transcription start site region 115914	175 bp upstream
Tssr115915	transcription start site region 115915	132 bp upstream
Tssr115916	transcription start site region 115916	91 bp upstream
Tssr115917	transcription start site region 115917	41 bp upstream
Tssr115918	transcription start site region 115918	26 bp upstream
Tssr115919	transcription start site region 115919	within coordinates
Tssr115920	transcription start site region 115920	25 bp downstream
Tssr115921	transcription start site region 115921	330 bp downstream
Tssr115922	transcription start site region 115922	426 bp downstream
Tssr115923	transcription start site region 115923	509 bp downstream
Tssr115924	transcription start site region 115924	580 bp downstream
Tssr115925	transcription start site region 115925	595 bp downstream
Tssr115926	transcription start site region 115926	944 bp downstream
Tssr115927	transcription start site region 115927	988 bp downstream