rs29181566 SNP Detail

Summary

• ID
  rs29181566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8059676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCTTTA CAATTGACTT
  GCTGGAAATA AAAGCAAAGA TCATTAGAAC TATCGACCAA ATTTTGAGCA GTGAGCTACA
  GTGGCCTCTT CCAGAAATGT ATTTGAGAGA CCTGGATGTA GTGAACATTC CTCTTGCAAG
  ACTGACTCTG CCAGACTTCC ATGTACCAGA AATCACAATT CCAGAATTCA CAATCCCAAA
  Y
  GTCAATCTCA AAGATTTACA CGTTCCTGAT CTTCACATAC CAGAATTCCA ACTTCCTCAC
  CTCTCACATA CAATTGAAAT ACCTGCTTTT GGCAAACTGC ATAGCATCCT TAAGATCCAA
  TCTCCTCTCT TTATATTAGA TGCTAATGCC AACATACAGA ATGTAACAAC TTCAGGGAAC
  AAAGCAGAGA TTGTGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38998665	mCV24183297	ABI	CRAMUS_MOUSE	f	SNP	T	C				T		T
ss50958144	NES14429016	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C		C	T	T		C	C	C		C
ss323884667	CHEV_12_8016482	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29181566					SNP	T	C	C	T	C	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958144	NES14429016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8059676 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	964 bp downstream
Tssr112639	transcription start site region 112639	1857 bp downstream
Tssr112640	transcription start site region 112640	1815 bp downstream
Tssr112641	transcription start site region 112641	1763 bp downstream
Tssr112642	transcription start site region 112642	1689 bp downstream
Tssr112643	transcription start site region 112643	1600 bp downstream
Tssr112644	transcription start site region 112644	1386 bp downstream
Tssr112645	transcription start site region 112645	1284 bp downstream
Tssr112646	transcription start site region 112646	1255 bp downstream
Tssr112647	transcription start site region 112647	1083 bp downstream
Tssr112648	transcription start site region 112648	1061 bp downstream
Tssr112649	transcription start site region 112649	579 bp downstream
Tssr112650	transcription start site region 112650	499 bp downstream
Tssr112651	transcription start site region 112651	447 bp downstream
Tssr112652	transcription start site region 112652	417 bp downstream
Tssr112653	transcription start site region 112653	398 bp downstream
Tssr112654	transcription start site region 112654	384 bp downstream
Tssr112655	transcription start site region 112655	361 bp downstream
Tssr112656	transcription start site region 112656	341 bp downstream
Tssr112657	transcription start site region 112657	327 bp downstream
Tssr112658	transcription start site region 112658	294 bp downstream
Tssr112659	transcription start site region 112659	215 bp downstream
Tssr112660	transcription start site region 112660	91 bp downstream
Tssr112661	transcription start site region 112661	131 bp upstream
Tssr112662	transcription start site region 112662	375 bp upstream
Tssr112663	transcription start site region 112663	610 bp upstream
Tssr112664	transcription start site region 112664	635 bp upstream
Tssr112665	transcription start site region 112665	800 bp upstream
Tssr112666	transcription start site region 112666	809 bp upstream
Tssr112667	transcription start site region 112667	856 bp upstream
Tssr112668	transcription start site region 112668	994 bp upstream
Tssr112669	transcription start site region 112669	1079 bp upstream
Tssr112670	transcription start site region 112670	1132 bp upstream
Tssr112671	transcription start site region 112671	1247 bp upstream
Tssr112672	transcription start site region 112672	1826 bp upstream
Tssr112673	transcription start site region 112673	1869 bp upstream
Tssr112674	transcription start site region 112674	1970 bp upstream
Tssr112675	transcription start site region 112675	1997 bp upstream