rs29182124 SNP Detail

Summary

• ID
  rs29182124
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111503903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GCCTCCTCGG GTGCACCTGC
  M
  GGGAGTCACA GTCACCAACC AGCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38997681	mCV24937701	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss138696518	ENSMUSSNP6081190	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss324159938	CHEV_12_112775680	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29182124					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111503903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	632 bp upstream
Gm56529	predicted gene, 56529	1901 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	547 bp upstream
Gm60631	predicted gene, 60631	1050 bp downstream
Rr403512	regulatory region 403512	358 bp upstream
Rr473211	regulatory region 473211	1925 bp distal
Rr473212	regulatory region 473212	1424 bp distal
Rr473213	regulatory region 473213	57 bp proximal
Rr473214	regulatory region 473214	1262 bp proximal
Rr473215	regulatory region 473215	1324 bp proximal
Tssr115316	transcription start site region 115316	1809 bp downstream
Tssr115317	transcription start site region 115317	1423 bp downstream
Tssr115318	transcription start site region 115318	1358 bp downstream
Tssr115319	transcription start site region 115319	264 bp downstream
Tssr115320	transcription start site region 115320	680 bp upstream
Tssr115321	transcription start site region 115321	795 bp upstream
Tssr115322	transcription start site region 115322	862 bp upstream
Tssr115323	transcription start site region 115323	1000 bp upstream
Tssr115324	transcription start site region 115324	1316 bp upstream
Tssr115325	transcription start site region 115325	1350 bp upstream
Tssr115326	transcription start site region 115326	1965 bp upstream
Tssr117828	transcription start site region 117828	448 bp downstream
Tssr117829	transcription start site region 117829	1110 bp downstream