rs29182270 SNP Detail

Summary

• ID
  rs29182270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33452073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAACC ATAAATAGGT
  TGGGGATGAT GGAGCCCCAC ACTCAGGAAA CTGAGGCAGG AGGATCTCTG TGAGTTCAAG
  GTCAGCCTGG TCTACCCTGT GAATTCCAGG CCACCCTGCA TAGTGTGATT CTGTTTCAGA
  AACCCAAAAA CAAATCGGAA ATAGGAAGGC TGGTAATAGT TCCATGGGTA AAGTTGCCTG
  Y
  TGGCAAGTTT GGTAACCTGA GTTCAATTTT TGGAATCCAC ATGGTAGAAG GAGAGAACCA
  TTTCCCCCAA GTTGTCATCT GGGCTGCACA CACACACACA CACACACACA CACACACACA
  CACACACACA CACAATTTAA ATCATAATGA AAACAAGTAG GGGTTGGAGA TTCCATGTAC
  TAGAGAGAGT GCTTGCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38993496	mCV24566612	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss137584550	ENSMUSSNP5951958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29182270					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33452073 () rs orientation: forward

Symbol	Name	Function Class
Efcab10	EF-hand calcium binding domain 10	807 bp downstream
Gm47506	predicted gene, 47506	within coordinates
Gm61262	predicted gene, 61262	within coordinates
Rr260275	regulatory region 260275	928 bp proximal
Rr267149	regulatory region 267149	1328 bp proximal