rs29182452 SNP Detail

Summary

• ID
  rs29182452
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422398 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAAAT GTTGCCATCT AAGGCATTTC
  W
  GCTAATCAAT AACAAAGTGT GAAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38997610	mCV23155914	ABI	CRAMUS_MOUSE	f	SNP	A	T						A
ss52314592	NES15371768	PERLEGEN	MM_PANEL2	r	SNP	T	A	A	A	T	T	T	T	T	T	T	T	T	T	T
ss137298148	ENSMUSSNP2117068	ENSEMBL	ENSEMBL_Sanger	r	SNP		A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29182452					SNP	A	T	T	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314592	NES15371768	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422398 () rs orientation: reverse

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	790 bp proximal
Gm49586	predicted gene, 49586	1276 bp upstream
Rr463710	regulatory region 463710	1803 bp distal
Rr463711	regulatory region 463711	1416 bp distal
Rr463712	regulatory region 463712	1021 bp proximal
Rr463713	regulatory region 463713	1132 bp proximal
Rr463714	regulatory region 463714	1146 bp proximal
Rr463715	regulatory region 463715	1287 bp proximal
Rr463716	regulatory region 463716	1326 bp proximal
Rr463717	regulatory region 463717	1814 bp proximal
Tssr112932	transcription start site region 112932	1293 bp upstream
Tssr112933	transcription start site region 112933	1855 bp upstream
Tssr115856	transcription start site region 115856	1084 bp downstream
Tssr115857	transcription start site region 115857	1104 bp downstream
Tssr115858	transcription start site region 115858	1129 bp downstream
Tssr115859	transcription start site region 115859	1153 bp downstream
Tssr115860	transcription start site region 115860	1209 bp downstream