rs29182991 SNP Detail

Summary

• ID
  rs29182991
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111503827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT AATGGAAGAG TGTCTAGGAA
  M
  GAAAAAGTCC GGGCTCCTCT TCCGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38993900	mCV24937702	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29182991					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111503827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	54 bp proximal
Eif5	eukaryotic translation initiation factor 5	708 bp upstream
Gm56529	predicted gene, 56529	1825 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	623 bp upstream
Gm60631	predicted gene, 60631	1126 bp downstream
Rr403512	regulatory region 403512	434 bp upstream
Rr473211	regulatory region 473211	1849 bp distal
Rr473212	regulatory region 473212	1348 bp distal
Rr473213	regulatory region 473213	133 bp proximal
Rr473214	regulatory region 473214	1338 bp proximal
Rr473215	regulatory region 473215	1400 bp proximal
Tssr115316	transcription start site region 115316	1733 bp downstream
Tssr115317	transcription start site region 115317	1347 bp downstream
Tssr115318	transcription start site region 115318	1282 bp downstream
Tssr115319	transcription start site region 115319	188 bp downstream
Tssr115320	transcription start site region 115320	756 bp upstream
Tssr115321	transcription start site region 115321	871 bp upstream
Tssr115322	transcription start site region 115322	938 bp upstream
Tssr115323	transcription start site region 115323	1076 bp upstream
Tssr115324	transcription start site region 115324	1392 bp upstream
Tssr115325	transcription start site region 115325	1426 bp upstream
Tssr117828	transcription start site region 117828	524 bp downstream
Tssr117829	transcription start site region 117829	1186 bp downstream