rs29184408 SNP Detail

Summary

• ID
  rs29184408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107906004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG ACCCTAAGCA CAGATGTAGA
  Y
  ACTATGTAAG TCTTCACACT TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39002524	mCV22713458	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss47276589	NES11394467	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	T		C		C	T	C		C
ss138671259	ENSMUSSNP7107074	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T				C
ss324151916	CHEV_12_109177955	CHEVERUD	SCREENING_POP	f	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29184408					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276589	NES11394467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107906004 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	1415 bp downstream
Tssr117636	transcription start site region 117636	1083 bp upstream
Tssr117637	transcription start site region 117637	1054 bp upstream
Tssr117638	transcription start site region 117638	996 bp upstream
Tssr117639	transcription start site region 117639	977 bp upstream
Tssr117640	transcription start site region 117640	961 bp upstream
Tssr117641	transcription start site region 117641	944 bp upstream
Tssr117642	transcription start site region 117642	906 bp upstream
Tssr117643	transcription start site region 117643	787 bp upstream
Tssr117644	transcription start site region 117644	671 bp upstream
Tssr117645	transcription start site region 117645	622 bp upstream
Tssr117646	transcription start site region 117646	604 bp upstream
Tssr117647	transcription start site region 117647	592 bp upstream
Tssr117648	transcription start site region 117648	522 bp upstream
Tssr117649	transcription start site region 117649	496 bp upstream
Tssr117650	transcription start site region 117650	434 bp upstream