rs29184422 SNP Detail

Summary

• ID
  rs29184422
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46866278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTC AGCGGCTTGC CGCGGAAACC
  S
  AGGGGTCCAC AAAACGCGCT AGGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss39003229	mCV24792183	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs29184422					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46866278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	within coordinates
Gm60470	predicted gene, 60470	1132 bp upstream
Nova1	NOVA alternative splicing regulator 1	135 bp upstream
Rr465708	regulatory region 465708	577 bp distal
Rr465709	regulatory region 465709	833 bp distal
Rr465710	regulatory region 465710	76 bp distal
Rr465711	regulatory region 465711	642 bp proximal
Tssr116213	transcription start site region 116213	1399 bp upstream
Tssr116214	transcription start site region 116214	1366 bp upstream
Tssr116215	transcription start site region 116215	1340 bp upstream
Tssr116216	transcription start site region 116216	1138 bp upstream
Tssr116217	transcription start site region 116217	978 bp upstream
Tssr116218	transcription start site region 116218	707 bp upstream
Tssr116219	transcription start site region 116219	558 bp upstream
Tssr116220	transcription start site region 116220	491 bp upstream
Tssr116221	transcription start site region 116221	469 bp upstream
Tssr116222	transcription start site region 116222	437 bp upstream
Tssr116223	transcription start site region 116223	399 bp upstream
Tssr116224	transcription start site region 116224	291 bp upstream
Tssr116225	transcription start site region 116225	246 bp upstream
Tssr116226	transcription start site region 116226	124 bp upstream
Tssr116227	transcription start site region 116227	within coordinates
Tssr116228	transcription start site region 116228	4 bp downstream