rs29184552 SNP Detail

Summary

• ID
  rs29184552
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53632633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTCTTT GAATTTTTAA
  TTTCAGAAGA AGTGTACCAT TAGTATTTGA TTGCCTGGTT TATTTACATT ATCCTGTCCT
  AGAAGTGGGA TGTACGTTTG GGGGTTTATT AGATCAGTAA TTTTGTTTAA ATACAGTTAT
  ACATGACTGA CCCTGTCTGA CCTGAAATTC TTAGAGCTGT AACATACGTA CTTCAGACTG
  M
  AGACAGTTTC CTAAGTTTGG CGTGTGTGCA TAACCTTAGT GGAGTACAGT AACCTGAGAG
  GATGCAGGCA GGAATGCTTA GGAACTAAAA TTTAGAATCA CTGTATCAGC GACAGCCCAT
  AATATTTTTT CCTGTATTCC TTCGGTAAGT CAAAATGAAA GCAGAATATT TAAACTGTAT
  ATTAAATGCA TAAAAAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38999839	mCV22367576	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss137756580	ENSMUSSNP1943411	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29184552					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53632633 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256680	regulatory region 256680	433 bp distal
Rr256681	regulatory region 256681	1768 bp proximal
Rr267627	regulatory region 267627	769 bp proximal