rs29184619 SNP Detail

Summary

• ID
  rs29184619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51741258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTCTAA CAGTTCAGCT
  TGCCTAACTG GAATTCTCTC TCTGACCCCT TGCTGAGTCA TTTCCTCTCT TCAGTCCCCT
  TTGAAACTTC CTATTTATCC TGTCCTCTCA CCTGTCACTC CTCCCTGCTC CTGCCTAGAT
  TCTCCTTCTT TCAGAATGAT TTGGGGTAGG TGGAGGGTAA AATGGTGTGC TGCCCTTGAG
  Y
  GTGAGATTCT CCTGTTTCTG CCACCCAAGT GCTGGGATTG CAAATGGACT TCAGCTTGCT
  CAGTTCATGA TGATCTTCAT GAAAGTCTAT GTATGGCTGC TCGGTACTTT CTGCACTGGG
  GAGGCTGAGC CAGAATTATT GCTGAGAGTC TGAACCCTGA GTCATGTGAA GAATTCTAGG
  CTAGACTAAA GTACACAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss39002635	mCV24841400	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss137724503	ENSMUSSNP4475364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs29184619					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51741258 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Cpgi4590	CpG island 4590	1920 bp distal
Gm61171	predicted gene, 61171	1886 bp downstream
Rr256575	regulatory region 256575	943 bp proximal
Rr265419	regulatory region 265419	1257 bp distal
Tssr113422	transcription start site region 113422	1829 bp downstream