rs29184774 SNP Detail

Summary

• ID
  rs29184774
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GGACTTCCAG CAGCCCCACT
  S
  TCTCCGCACA GCAGACGGGA AGTCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39001530	mCV22302947	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss137401602	ENSMUSSNP4363474	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323938301	CHEV_12_25781312	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29184774					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Cpgi4501	CpG island 4501	1884 bp proximal
Gm59395	predicted gene, 59395	13 bp upstream
Id2	inhibitor of DNA binding 2	355 bp upstream
Rr403250	regulatory region 403250	84 bp downstream
Rr463954	regulatory region 463954	within coordinates
Rr463955	regulatory region 463955	24 bp proximal
Rr463956	regulatory region 463956	683 bp proximal
Rr463957	regulatory region 463957	1696 bp proximal
Tssr112979	transcription start site region 112979	708 bp downstream
Tssr112980	transcription start site region 112980	within coordinates
Tssr112981	transcription start site region 112981	5 bp upstream
Tssr112982	transcription start site region 112982	981 bp upstream
Tssr115883	transcription start site region 115883	1917 bp upstream
Tssr115884	transcription start site region 115884	654 bp upstream
Tssr115885	transcription start site region 115885	351 bp upstream
Tssr115886	transcription start site region 115886	792 bp downstream