rs29185357 SNP Detail

Summary

• ID
  rs29185357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69621659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCTGAAAAT CAAATTTAAT TAAAAATTTT TAAAATCTGA GGGCTGGCTG CAATTCAAAA
  CCGAGTCTTT TCACAGCCAC CTTACTAGAC GCTGTTTAAA GACAAAGATG TGTAATGCCA
  CCTACAGGGC ACCTTTGGAA CTACAGTCCT ACTTCTATGT CCCACACTGG GTTAAAAAAA
  AAAAAAGGCA AACCCTTGCT CATCACATTT AGCCAGAAAG CGTGAGGAGG GGGCGAAAAG
  AAGCACAAGA AGACGCACCG CCATTCTGTC CTGCACTTAA ATAATAATGT GGAATCAAAA
  Y
  CAACCCGGTG TCACCAACTA TAATCCACAG ACTGTTAGAA ATGGGAGAAG AGTTAGGCAA
  CCAGAGGGAG AAGGTGGAAG AGGCTCAAGT CACTGGTGAG GAGGCCTGCA ATTTGCCTCT
  GAATTGTAGA ATCCCTCCCC CAGCCTTCAG TTAACAGCGA TTCTGGTTCC TAGAGTTGTT
  CCACAGGTTT TGAGGTTCAG CCCCTCATTC TGGGCAGGAC AGGCCACTCT AACCAGAGCA
  CTTCTCTTCC CTTCTCTCGC CCTCCCTGCT GGGAGGTAGT AGACACGGGT TTCTTTATGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39002155	mCV22702577	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss51017755	NES14400710	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	C	C	C	C	C	T
ss137859511	ENSMUSSNP6098164	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29185357					SNP	T	T	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017755	NES14400710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69621659 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1459 bp distal
Rr257074	regulatory region 257074	within coordinates
Rr403327	regulatory region 403327	40 bp downstream