rs29185376 SNP Detail

Summary

• ID
  rs29185376
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTTC GAATCAATCA GGTAGATATC
  W
  CCACAGGTTT AATGACCAGA TGAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss39001544	mCV25100858	ABI	CRAMUS_MOUSE	f	SNP		A						T		A
ss47236601	NES11413495	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		A			T		A
ss137997064	ENSMUSSNP1449506	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
ss324138813	CHEV_12_102125102	CHEVERUD	SCREENING_POP	f	SNP											T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs29185376					SNP	A	A	T	T	T	A	T	T	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47236601	NES11413495	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853151 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	1179 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	786 bp proximal
Rr471363	regulatory region 471363	1007 bp proximal
Tssr114718	transcription start site region 114718	1011 bp downstream
Tssr117330	transcription start site region 117330	944 bp downstream
Tssr117331	transcription start site region 117331	978 bp downstream
Tssr117332	transcription start site region 117332	998 bp downstream
Tssr117333	transcription start site region 117333	1033 bp downstream
Tssr117334	transcription start site region 117334	1059 bp downstream
Tssr117335	transcription start site region 117335	1134 bp downstream
Tssr117336	transcription start site region 117336	1181 bp downstream