rs29185377 SNP Detail

Summary

• ID
  rs29185377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112793095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGAAGGC GCAAACCAGC
  TACACACTTA CCGGCGCCGC AAGGCAGACC CCGCCACTCC TTCGGGCACC CGGATCGGTC
  AGCGCCCACA AAGGGTCGCC ATGGCGCCGC CGCACGAGCG CCGATTGGTG GCGTGCGGGG
  TGGAGCTTTG TTCAAACCCA CGCAAGGCGG AGCCTCGCCG GCCGCGTCTC CCGCGCTTCG
  R
  CCTCAGCCGT TAGGCTCGCG CGCTGGGCCG CCCCGCCCCC GTTCCCAAGT CTCCCCGCGC
  CCCGCCCCGC CCCCGATCCC TTGTTTGTCG ACGGCTCGAC CCGTTCCCAG GGTTCCGCGC
  GCTCCGCTCC CAGGGTTCCG CGCGCCTGGC CACCGCCCCA GTTCCCAGGT CTCCTTGCGC
  CTGGCCCCGC CCCCAGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39001545	mCV23888983	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29185377					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112793095 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	52 bp upstream
Cpgi5185	CpG island 5185	within coordinates
Gm52009	predicted gene, 52009	within coordinates
Gm56552	predicted gene, 56552	110 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	within coordinates
Tssr3960	transcription start site region 3960	within coordinates
Tssr115439	transcription start site region 115439	314 bp downstream
Tssr115440	transcription start site region 115440	185 bp upstream
Tssr115441	transcription start site region 115441	1543 bp upstream
Tssr117911	transcription start site region 117911	369 bp upstream
Tssr117912	transcription start site region 117912	49 bp upstream
Tssr117913	transcription start site region 117913	11 bp downstream