rs29186206 SNP Detail

Summary

• ID
  rs29186206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28777617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CCCCAGTCTT TATTTACTGA
  Y
  GAGAGAATAT AGAATACTCA TTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss39001973	mCV22628076	ABI	CRAMUS_MOUSE	f	SNP	T	T			C	T
ss52346809	NES15375488	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		T	T		C	C
ss137505114	ENSMUSSNP4911561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss323972616	CHEV_12_29412483	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29186206					SNP	T	T	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346809	NES15375488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28777617 () rs orientation: forward

Symbol	Name	Function Class
Rr269361	regulatory region 269361	955 bp distal
Rr269362	regulatory region 269362	within coordinates
Trappc12	trafficking protein particle complex 12	within coordinates