rs29186225 SNP Detail

Summary

• ID
  rs29186225
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112643085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATC AGGGAGGAAC TCACTAAAGA
  S
  GTGACCTTCA AGCAAAGGCA GGAAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss38999874	mCV23219083	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss138725645	ENSMUSSNP4699093	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss324170106	CHEV_12_113914862	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29186225					SNP	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112643085 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1819 bp upstream
Cpgi5173	CpG island 5173	1742 bp distal
Cpgi5174	CpG island 5174	1452 bp proximal
Gm30150	predicted gene, 30150	681 bp downstream
Rr369631	regulatory region 369631	1112 bp downstream
Rr473556	regulatory region 473556	704 bp distal
Rr473557	regulatory region 473557	1648 bp distal
Rr473558	regulatory region 473558	1183 bp distal
Rr473559	regulatory region 473559	992 bp distal
Rr473560	regulatory region 473560	746 bp distal
Rr473561	regulatory region 473561	1675 bp proximal
Rr473562	regulatory region 473562	1687 bp proximal
Rr473563	regulatory region 473563	1960 bp proximal
Tssr117882	transcription start site region 117882	1887 bp upstream
Tssr117883	transcription start site region 117883	1837 bp upstream
Tssr117884	transcription start site region 117884	1814 bp upstream