rs29187589 SNP Detail

Summary

• ID
  rs29187589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33202932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCATTA TAATTTTATA
  AGGCTTAATG ATTAAAAACA ATTTCTTTGG ACATAGAGTA TTCATACATT AGTTAAGAAG
  CGGGTTTTGT CAAAGGCAAG AGAAAAATAC TTAGGCTTCT GAGCATGAAG AGGTTTTCTT
  TTTCTTTTTC TTGTTTTTCT TTTTCCTTTC CCTTTCTGAT GGCTTCGGAG GTCTACAAAA
  R
  TACTTTTCAA ATGATAAGTT GTTTCATTTT ATCACGGAGA AAAATAAGTT CTCCAGGGAC
  GTTTTCTGGG CCTTCTGGAC TTGGGCAGTA GGCTGTAGTT CCCAGCATTT CATTTGGTGG
  AGGTAAATGT GAAATGCATC CAGTCTCAGA GAGCACCGGA ACAGAGAAAG CTTGCTGTGG
  AAGGCCCAAG TGCTCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39003397	mCV23134799	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss137582774	ENSMUSSNP6077569	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29187589					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33202932 () rs orientation: forward

Symbol	Name	Function Class
Atxn7l1	ataxin 7-like 1	within coordinates
Rr260247	regulatory region 260247	1132 bp distal
Rr260248	regulatory region 260248	332 bp distal
Rr267129	regulatory region 267129	within coordinates