rs29187815 SNP Detail

Summary

• ID
  rs29187815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25144205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA GTAACCGAAT ACTGGGTCCT
  Y
  CTGGTATTCA CGCTCCACCT TTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39001894	mCV22303003	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss137401569	ENSMUSSNP6783449	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29187815					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25144205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1172 bp distal
Cpgi4500	CpG island 4500	1281 bp proximal
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	980 bp downstream
Rr403250	regulatory region 403250	1856 bp upstream
Tssr112979	transcription start site region 112979	1511 bp upstream
Tssr115883	transcription start site region 115883	322 bp downstream
Tssr115884	transcription start site region 115884	1515 bp downstream
Tssr115885	transcription start site region 115885	1874 bp downstream