rs29187817 SNP Detail

Summary

• ID
  rs29187817
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82291260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAT TGTCTTGTCA GAGGTCAAAT
  M
  CCACGCAGTG AATCCATGAC CTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss39001896	mCV23642048	ABI	CRAMUS_MOUSE	f	SNP		A	C			A		C
ss51025949	NES14384813	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A		C	C	C		A		A
ss137922555	ENSMUSSNP771655	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					C
ss324112456	CHEV_12_83345473	CHEVERUD	SCREENING_POP	f	SNP										C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29187817					SNP	A	A	C	C	A	A	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51025949	NES14384813	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82291260 () rs orientation: forward

Symbol	Name	Function Class
Rr261652	regulatory region 261652	within coordinates
Rr268532	regulatory region 268532	541 bp proximal
Rr403397	regulatory region 403397	954 bp upstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114221	transcription start site region 114221	156 bp upstream
Tssr114222	transcription start site region 114222	1032 bp upstream
Tssr114223	transcription start site region 114223	1199 bp upstream
Tssr114224	transcription start site region 114224	1244 bp upstream
Tssr114225	transcription start site region 114225	1320 bp upstream
Tssr116943	transcription start site region 116943	912 bp downstream