rs29187819 SNP Detail

Summary

• ID
  rs29187819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:27385169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GACAAACAGG CTAACCTACC CCTCTATACT TTGCCTATGC TTTTTATTTA CTCTATTGGC
  CAGTTAAAAA TACCAAGACA CGATCACCAT GCTTATTCCA CTGTGGGCAG CTCGCAGCCT
  GCCCTAAGCA TCACTTCCTG AGGGCCCCAG TCCTGCCCAA GCTGTGGGTC CTGGTTGGAT
  GCTGAGACAC CAAGACTTTT CAAATCTCTC AGCTTCGAGA CAACACTTTA GGAGTCACAC
  AGTAGTTACC CAATGCAAAG TGGGAAAGAT AAACAAAAAA CAAAACAAAA CAAAAAAAAA
  M
  AAAAAATCAA AAACAAAACA AAAAAGTCAC ATAAAAGCCA CATGTGGAGA TTGATCACAC
  GATTTTTATT GGTCTTTTGA ACAAATGTAT TCCTCTGTGA AAAACTCCTG CAAAAAGAGA
  CATTGGAGTG TATGAATTCA ACCCTGAGCA TTAACACTGC ATTCCAAGGA GGGCGGTCAC
  GAAGCTGGTT TGATTGAAGC ACAAAGCACA AGCCACTGAT ACTCTCTTGT GTGATCAGGT
  TTTTACAAAA AAATACATAG TTTTCAATAA ATAATGCTTA ATTTTACAAC TTTGATACAG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39001898	mCV22641551	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29187819					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27385169 () rs orientation: forward

Symbol	Name	Function Class
Rr464223	regulatory region 464223	1183 bp distal
Rr464224	regulatory region 464224	83 bp proximal
Rr464225	regulatory region 464225	1742 bp proximal
Sox11	SRY (sex determining region Y)-box 11	mRNA-UTR
Tssr113042	transcription start site region 113042	1043 bp upstream
Tssr113043	transcription start site region 113043	1199 bp upstream
Tssr115960	transcription start site region 115960	391 bp upstream
Tssr115961	transcription start site region 115961	26 bp upstream
Tssr115962	transcription start site region 115962	404 bp downstream
Tssr115963	transcription start site region 115963	883 bp downstream
Tssr115964	transcription start site region 115964	1234 bp downstream
Tssr115965	transcription start site region 115965	1297 bp downstream
Tssr115966	transcription start site region 115966	1386 bp downstream
Tssr115967	transcription start site region 115967	1658 bp downstream
Tssr115968	transcription start site region 115968	1672 bp downstream
Tssr115969	transcription start site region 115969	1749 bp downstream
Tssr115970	transcription start site region 115970	1774 bp downstream
Tssr115971	transcription start site region 115971	1817 bp downstream
Tssr115972	transcription start site region 115972	1951 bp downstream