rs29188035 SNP Detail

Summary

• ID
  rs29188035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101941932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GACCCACCTT CAGCCTGGTG
  M
  CAAGGCGACC AAGGACAGCC GCAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39002494	mCV24967437	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	C
ss47246858	NES11398641	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	A	A		C	A	C	C	C	C
ss138002874	ENSMUSSNP5356686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29188035					SNP	A	A	A	C	C	A	A	A	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47246858	NES11398641	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101941932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	within coordinates
Cpsf2	cleavage and polyadenylation specific factor 2	315 bp upstream
Gm59441	predicted gene, 59441	1917 bp downstream
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	within coordinates
Rr387709	regulatory region 387709	within coordinates
Tssr3923	transcription start site region 3923	210 bp downstream
Tssr114729	transcription start site region 114729	302 bp downstream
Tssr114730	transcription start site region 114730	52 bp upstream
Tssr114731	transcription start site region 114731	292 bp upstream
Tssr114732	transcription start site region 114732	333 bp upstream
Tssr117383	transcription start site region 117383	10 bp downstream
Tssr117384	transcription start site region 117384	92 bp downstream
Tssr117385	transcription start site region 117385	240 bp downstream
Tssr117386	transcription start site region 117386	262 bp downstream
Tssr117387	transcription start site region 117387	306 bp downstream
Tssr117388	transcription start site region 117388	350 bp downstream
Tssr117389	transcription start site region 117389	531 bp downstream
Tssr117390	transcription start site region 117390	592 bp downstream
Tssr117391	transcription start site region 117391	609 bp downstream
Tssr117392	transcription start site region 117392	1204 bp downstream
Tssr117393	transcription start site region 117393	1224 bp downstream