rs29188154 SNP Detail

Summary

• ID
  rs29188154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108144334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC TATCACTGTT TAAAACTCAT
  Y
  TTAAAAACAC CCTCAGCATC GCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39004650	mCV25195822	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss138673142	ENSMUSSNP41137	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss324152844	CHEV_12_109416285	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29188154					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108144334 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1504 bp upstream
Cpgi5076	CpG island 5076	161 bp proximal
Rr403488	regulatory region 403488	1254 bp upstream
Rr472438	regulatory region 472438	1498 bp distal
Rr472439	regulatory region 472439	130 bp proximal
Rr472440	regulatory region 472440	1131 bp proximal
Rr472441	regulatory region 472441	1674 bp proximal
Rr472442	regulatory region 472442	1828 bp proximal
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	408 bp upstream
Tssr114949	transcription start site region 114949	776 bp upstream
Tssr114950	transcription start site region 114950	1058 bp upstream
Tssr114951	transcription start site region 114951	1061 bp upstream
Tssr114952	transcription start site region 114952	1468 bp upstream
Tssr114953	transcription start site region 114953	1718 bp upstream
Tssr114954	transcription start site region 114954	1833 bp upstream
Tssr117676	transcription start site region 117676	1135 bp downstream
Tssr117677	transcription start site region 117677	1162 bp downstream