rs29188289 SNP Detail

Summary

• ID
  rs29188289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110815710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGCTCT TACAGAAGTC
  CAGGGTTCCA TTCCCAGCAA CCACATGGTG GCTCACAGCA ATCCCTCTGT TCCAGGGGAC
  TGCCAGTAAC ACGAGTTGTG TACATAGACC CAGGCAAAAC ACCCATACAC ATAAGACAAA
  ACAAAAAATG AAATTAAATG CAAACTTTAT AATCCTATTG TGAGGCAGGG TAAAACTGAG
  M
  GGACACACGG AAGGGAAAAG TGCTCATTAC CCTGGAGTCG CGCTGAAGCC TCATGCCAGC
  AGGGTGTCAA GCAAGGACTC ATGCATAATT GACAATTACT GAGAAGGTTG CCAACATAAA
  GAGAATATTC CATCTATATA GAAATGCTTA AGATAATAAT GTTAAAAACT GGGCATGATG
  GCACACACCT TCATTTCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39004458	mCV25034356	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss138693465	ENSMUSSNP291873	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29188289					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110815710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	621 bp proximal
Tssr115237	transcription start site region 115237	997 bp upstream
Tssr115238	transcription start site region 115238	1028 bp upstream
Zfp839	zinc finger protein 839	977 bp upstream