rs29188518 SNP Detail

Summary

• ID
  rs29188518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109529541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG TACTGTGTAT TGAATCTGTC
  Y
  TCTTATTGGC CTCTGTGGGC TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38999816	mCV23440199	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss61717770	NES17649394	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T		T	T	T	T		T
ss138683228	ENSMUSSNP3979286	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss324156105	CHEV_12_110801317	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29188518					SNP	T	T	C	T	T	T	C	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717770	NES17649394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109529541 () rs orientation: forward

Symbol	Name	Function Class
Meg3	maternally expressed 3	within coordinates
Mir770	microRNA 770	585 bp upstream
Tssr115120	transcription start site region 115120	1557 bp upstream
Tssr115121	transcription start site region 115121	1592 bp upstream
Tssr115122	transcription start site region 115122	1787 bp upstream