rs29188544 SNP Detail

Summary

• ID
  rs29188544
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110665091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAACCCA AGGCTACCTA
  TGTGATACAC TAGGCAAGCT AGGCCCTCCA CTGGGCCAGA ACAGGCTCTC AGTTGCCAAT
  ACTTGCTTTA AGGGAACTTT AGCACAGGCA GACTGAATTT CCATCTTCCT ATCTCAGCCT
  TCCAAGTAGC TGGGACTGAA GGCCAAGATC TGGCTTAAGG TCTCCTGTTA TCAATCAGGC
  M
  AGCAACCAAC CAATCAACTA AAATCTAAAA AGGAAACCAG TAGAGGAAGC AAGTTTAAAG
  GGTTTCTGGA AGGCGGGGTG ACCAACATGA GGTAGCGTAG AAACTTAGAA ACGTAAAGGG
  GCACAGGAGA GAGAGCCTTC ACTCCGGAGT CTAACCCAAG TTCCTCACCA ACTGAGAGTC
  ACAAACTTCA GAACAATTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39004851	mCV24497751	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29188544					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110665091 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	1541 bp downstream
Cpgi5120	CpG island 5120	1516 bp distal
Gm60092	predicted gene, 60092	408 bp upstream
Rr472969	regulatory region 472969	1772 bp distal
Rr472970	regulatory region 472970	within coordinates
Rr472971	regulatory region 472971	419 bp proximal
Rr472972	regulatory region 472972	1056 bp proximal
Tssr115233	transcription start site region 115233	397 bp upstream