rs29188582 SNP Detail

Summary

• ID
  rs29188582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110243517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTGAAGA GAACTATCTC TTGCTCTACC CAAGACAGCG
  CCCAGAAGCT CCCAATCTGT CTCTCAGACT CTCCAGCCAG AGTCTCTTCT CACTTTACCA
  Y
  CTAAGTCTGA AAGAGAGTGG GGGGGGGGTT GATCTGTAAG CTCAGAGGAG CCCTGCTTAG
  GGATAGAACC ATGAGTGGAA CCCCCAGCCA GGCACGTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39004481	mCV24944654	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss138688726	ENSMUSSNP4506736	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29188582					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110243517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	195 bp proximal
Dio3os	deiodinase, iodothyronine type III, opposite strand	within coordinates
Mir1247	microRNA 1247	965 bp downstream
Rr472865	regulatory region 472865	844 bp distal
Rr472866	regulatory region 472866	82 bp proximal
Rr472867	regulatory region 472867	996 bp proximal
Rr472868	regulatory region 472868	1101 bp proximal
Tssr117772	transcription start site region 117772	1849 bp downstream
Tssr117773	transcription start site region 117773	1875 bp downstream