rs29188844 SNP Detail

Summary

• ID
  rs29188844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76628241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGCCTGGGT GACATGAGTG CAAGTGTGGG GAGCTGGCTG TGATGGGAGG TCCAATGCAG
  CTTACTGCCC TTGTATATCC TTTGCGGTGA AATCCTAGCT CTTCCATTGG AGCCTTTTCT
  TTCCTGGCTC TGTGGAGTTA CCGGGAAATT CTCACTTCAG GCGCTACTTG AGTACACGTG
  GAAGGGAAAT GTAGACCCTC ATCCCTTGGC CCCCCAGACT AAGCCAGGGG AGCTGCCTGA
  GGGCGCTGCT TGCCACCTAA TGCTTCATCG AGGAGCCCAC TTCCTCTCCC AGAAGATAGA
  Y
  GTGCCTTTCA GTGTACCAAG GCCATTTTTA TTGTCAGGGT GCAGATGCCT CCCTGCCTAC
  TGCTTTGGTT TCTCCAGCTG TACAAAGAGG CTGGTGAATG GTGCCCTCTA TGTTCCCTGT
  AGGAGAGAGT TATAGGGTCC TATACGCTGA AACCAAGTTA CAGACTGGCT GTGGAGATGA
  AGAAATCAGG CCCCACTGGC TAAGGTGGTC GTAGTCTACT GGAGTTGAGT TCATACTCAG
  ATCATGTTGG GGGCTACAGG GTGCAACTGA TCTCTGAGCT ATACCTGCCT GGTCAACAAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39005404	mCV23367406	ABI	CRAMUS_MOUSE	f	SNP		T	C				C
ss47166771	NES11216493	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C		C	T	C	C	C	T	C	T
ss137907003	ENSMUSSNP2010894	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29188844					SNP	T	T	C	C	T	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47166771	NES11216493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76628241 () rs orientation: forward

Symbol	Name	Function Class
Plekhg3	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	976 bp downstream
Rr468208	regulatory region 468208	820 bp distal
Rr468209	regulatory region 468209	1377 bp proximal
Sptb	spectrin beta, erythrocytic	mRNA-UTR