CATTT TACCGCACGC TGTGTTCAGC Y GCAGAGTAAA CGCTGCTTAA AGCTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39005206 | mCV22363447 | ABI | CRAMUS_MOUSE | f | SNP | C | T | T | ||||||||||||||
ss47092490 | NES11250527 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | T | T | C | T | C | T | C | T | C | C | C | ||||
ss137760080 | ENSMUSSNP2204206 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | |||||||||||||||
ss324044501 | CHEV_12_54914099 | CHEVERUD | SCREENING_POP | f | SNP | T | C | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs29188885 | SNP | C | C | T | T | T | T | C | T | C | T | T | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47092490 | NES11250527 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr12:53859895 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Npas3 | neuronal PAS domain protein 3 | within coordinates | ||||||
Rr260842 | regulatory region 260842 | 106 bp proximal | ||||||
Rr267638 | regulatory region 267638 | 296 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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