rs29189025 SNP Detail

Summary

• ID
  rs29189025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:51742650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTGTACTC ATGCATAAAA TAAATAAATA AATCTTTAAA AGAAAAAAAA AACTGACATG
  AGTTCAGACC AAAGGAGCAT ACCACATATT ACATAGCTAC AACCAAAAAG GAGGAGGCAG
  CTCTGACCTG CACTGAGGCC TAGCCTGCAA AATGAGATCA GATGCTGACT CTTTACAGAA
  GTTGCTTGTG GCTATGTGTC TTAGTTTGTT TTTTACTGCT AAGAACAGAC ACTATGATCA
  AGGCAACTCT TATAAAAACA GCATTTTATT GGGGCTGGCT TACAGATTCA GAAGTTCAGT
  Y
  CACTATCATC AAGGCATGAG CATGGCAGCA TCCAGGCCGG CATGGTACAG CAGGAGGTGA
  GAGTTCTACA TCTTCATCCA AAGGCAACCA GGAAAAGACT AGCTTCCAGG CAGCTAGGAA
  GAGGGTCTTA AAGCCCACGC CCACAGTGAT ACACCTACTC CAAGGGTACG CCTCCAAATA
  ATGCCACTCC CTGCACCAAA CATATTCAAA CCACTATACT ATGAAAATTA CAAATATATA
  CTTTATGTAT TACGCAAGCC AAAGTATGCC AGGGGATTCT GGGCTTTGAA GTAAGTTGGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39004972	mCV24841685	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss137724524	ENSMUSSNP2166764	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29189025					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51742650 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	Intron
Rr465892	regulatory region 465892	314 bp distal