rs29190097 SNP Detail

Summary

• ID
  rs29190097
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:16862141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA AGATTGTTGT AAATAAGATC
  S
  GTAGGTCACT GATGGTTTTG TCAAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39007533	mCV22349800	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss137196050	ENSMUSSNP52843	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323920187	CHEV_12_16818946	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29190097					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16862141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4441	CpG island 4441			317 bp distal
E2f6	E2F transcription factor 6			Intron
				Noncoding-Transcript-Variant
Rr463370	regulatory region 463370			1153 bp distal
Rr463371	regulatory region 463371			57 bp distal
Tssr112858	transcription start site region 112858			1162 bp downstream
Tssr112859	transcription start site region 112859			1150 bp downstream
Tssr112860	transcription start site region 112860			251 bp upstream