rs29190235 SNP Detail

Summary

• ID
  rs29190235
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108143957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA CTAGAGTTGC ATATCCAGAT
  W
  TTAGTAATAT CTCAAAAGAG AAAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39006351	mCV25195811	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	T
ss138673136	ENSMUSSNP5220756	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
ss324152842	CHEV_12_109415908	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29190235					SNP	A	A	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108143957 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1881 bp upstream
Cpgi5076	CpG island 5076	538 bp proximal
Rr403488	regulatory region 403488	1631 bp upstream
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	785 bp upstream
Tssr114949	transcription start site region 114949	1153 bp upstream
Tssr114950	transcription start site region 114950	1435 bp upstream
Tssr114951	transcription start site region 114951	1438 bp upstream
Tssr114952	transcription start site region 114952	1845 bp upstream
Tssr117676	transcription start site region 117676	1512 bp downstream
Tssr117677	transcription start site region 117677	1539 bp downstream