rs29190348 SNP Detail

Summary

• ID
  rs29190348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51740525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTCTTT AGTAAATGAA
  GAAATGAGGC TGGAGAGATG GCTCAGCAGT TAAGAGCACT GACTGCTCTC CTAGGCGTCC
  TGAGTTCAGT TCCCAGCGAC CACAGTGACT CACAGCCATC TGAAATGGGA TACAGTGCTC
  TCTTCTGGTG TGTCTGAGAG AGCAACAGTG TACTCACATA AGTAAATACA TCTTTTTTTT
  W
  ATATGAAGAA ATAGTACTGT TATCTAAGAG TTATTGACAA TCAGCATACA GCTGGCTCAA
  GCAGTCCCAT TCCTTAAGAA AGAACACATA AAAAGCTCAG AAAAACTTAC ATCCTGGGTA
  CCTATTTTAT GAACACAAGG AAGCTTTTAG GGATCTGAAG CCCACATGGC TGGTGATTAT
  GTCAAAAGAG CAAGTTGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39005957	mCV24841389	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29190348					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51740525 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Cpgi4590	CpG island 4590	1187 bp distal
Gm61171	predicted gene, 61171	1153 bp downstream
Rr256575	regulatory region 256575	1676 bp proximal
Rr265419	regulatory region 265419	524 bp distal
Rr403281	regulatory region 403281	1568 bp downstream
Strn3	striatin, calmodulin binding protein 3	1845 bp upstream
Tssr113422	transcription start site region 113422	1096 bp downstream
Tssr116250	transcription start site region 116250	1817 bp upstream
Tssr116251	transcription start site region 116251	1733 bp upstream
Tssr116252	transcription start site region 116252	1716 bp upstream
Tssr116253	transcription start site region 116253	1684 bp upstream
Tssr116254	transcription start site region 116254	1650 bp upstream