rs29191636 SNP Detail

Summary

• ID
  rs29191636
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25144210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC CGAATACTGG GTCCTTCTGG
  W
  ATTCACGCTC CACCTTTGTG AAAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39006802	mCV22303002	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss137401572	ENSMUSSNP434198	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss323938291	CHEV_12_25779076	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29191636					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25144210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1177 bp distal
Cpgi4500	CpG island 4500	1276 bp proximal
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	985 bp downstream
Rr403250	regulatory region 403250	1851 bp upstream
Tssr112979	transcription start site region 112979	1506 bp upstream
Tssr115883	transcription start site region 115883	317 bp downstream
Tssr115884	transcription start site region 115884	1510 bp downstream
Tssr115885	transcription start site region 115885	1869 bp downstream