rs29191717 SNP Detail

Summary

• ID
  rs29191717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:108146595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG AATGAAAAGG GACTTCCTCG
  R
  TAAGACTCGT TCTTACCCAG ACGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39007507	mCV24506018	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss61704040	NES17652876	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G		G	G	G	G		G	G	G	G		G
ss138673169	ENSMUSSNP681215	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss324152851	CHEV_12_109418546	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29191717					SNP	A	A	G	G	A	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61704040	NES17652876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108146595 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	Intron
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	706 bp downstream
Rr472439	regulatory region 472439	1131 bp distal
Rr472440	regulatory region 472440	588 bp distal
Rr472441	regulatory region 472441	within coordinates
Rr472442	regulatory region 472442	412 bp distal
Setd3	SET domain containing 3	1022 bp upstream
Tssr114948	transcription start site region 114948	1839 bp downstream
Tssr114949	transcription start site region 114949	1476 bp downstream
Tssr114950	transcription start site region 114950	1202 bp downstream
Tssr114951	transcription start site region 114951	1167 bp downstream
Tssr114952	transcription start site region 114952	754 bp downstream
Tssr114953	transcription start site region 114953	505 bp downstream
Tssr114954	transcription start site region 114954	413 bp downstream
Tssr117676	transcription start site region 117676	1111 bp upstream
Tssr117677	transcription start site region 117677	997 bp upstream