rs29192704 SNP Detail

Summary

• ID
  rs29192704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53860836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCTGTA GAATATGTGG
  TCATGTCATG TATGCCTACC TATCTCTGCC TATTTCTTTC ACATACATGT GTACACACAC
  TTGCTTAAGT TCAGGGAGGG TCATTCATCA GCCATCTTTG CCAGCAGTGT ACAATTTCAC
  CTTAAAATTA TAATTCAGAG GCCCTGTGAC TTTCCCTGGG ATCCTGCCTC TGTTCTGGAC
  R
  ATCCTCACTG TCCTGTGTAG GGTCATCTTT CCCGCTACCC CACACTGTAT TTGCCCTTCA
  TTGAACGTAA AGGCAGTCAG AAGCCTGGGG GGTGGAAGGG GCTGGAGCAC TCCTCACCTC
  TCCCCAGCCT CCTGGAGGTG AATAATCCAA CACACTTAAC TGTTCCTTTA AAACTTTTAT
  TTTTTAAATC ACCTAAATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39007216	mCV22363437	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss47092508	NES11250550	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G		A	G	G	A		G
ss324044504	CHEV_12_54915040	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29192704					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092508	NES11250550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53860836 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	636 bp distal
Rr267638	regulatory region 267638	1237 bp distal