rs29193594 SNP Detail

Summary

• ID
  rs29193594
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100980724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC GTGGCTGCCC TCCCGTTTGT
  M
  CTTCAGCTGC TGGTGTTGCT TTCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39008813	mCV24973967	ABI	CRAMUS_MOUSE	f	SNP		A				A	C
ss47238677	NES11410699	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	A			C	C		C	C	C	C		C
ss137997850	ENSMUSSNP2373614	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					C
ss324139236	CHEV_12_102252675	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29193594					SNP	C	A	C	C	A	A	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238677	NES11410699	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100980724 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88c	coiled-coil domain containing 88C	within coordinates
Gm36756	predicted gene, 36756	within coordinates
Rr369588	regulatory region 369588	within coordinates
Rr471394	regulatory region 471394	1153 bp distal
Rr471395	regulatory region 471395	within coordinates
Tssr117343	transcription start site region 117343	1657 bp downstream