rs29194578 SNP Detail

Summary

• ID
  rs29194578
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46867268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG CACTATGTCA TTCTGAACGC
  S
  GACTGCAGAA ATTTAGAGAC AGGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39010936	mCV24792181	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29194578					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46867268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	473 bp distal
Gm60470	predicted gene, 60470	142 bp upstream
Nova1	NOVA alternative splicing regulator 1	1125 bp upstream
Rr465708	regulatory region 465708	1567 bp distal
Rr465709	regulatory region 465709	1823 bp distal
Rr465710	regulatory region 465710	1066 bp distal
Rr465711	regulatory region 465711	within coordinates
Tssr116217	transcription start site region 116217	1968 bp upstream
Tssr116218	transcription start site region 116218	1697 bp upstream
Tssr116219	transcription start site region 116219	1548 bp upstream
Tssr116220	transcription start site region 116220	1481 bp upstream
Tssr116221	transcription start site region 116221	1459 bp upstream
Tssr116222	transcription start site region 116222	1427 bp upstream
Tssr116223	transcription start site region 116223	1389 bp upstream
Tssr116224	transcription start site region 116224	1281 bp upstream
Tssr116225	transcription start site region 116225	1236 bp upstream
Tssr116226	transcription start site region 116226	1114 bp upstream
Tssr116227	transcription start site region 116227	987 bp upstream
Tssr116228	transcription start site region 116228	968 bp upstream