rs29195581 SNP Detail

Summary

• ID
  rs29195581
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36532887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGGTAA CTTGTAACTT
  TTGACATGCT GTAATATGTA TGCTGCACAT TCTGTAATTT GGTACATTTC AGCTAATCTC
  TCTTTGAATG GGCAGCAAGT GGTTTGATGT GACTATTTTC TTGTTAATTT AGTATTTTTC
  ACGCTATAAA ACTTTGCTAG GATAAATAAA ACAGTCTTAT GTCACATGCA AGAACATTTT
  K
  TACTGGCAAA TTTACTACTT GCTGGAATAA CAGATTTGGT TATATAAATA AAATATTTGA
  TCCATATTAA TTTACAATCA AGTCAACAGC TTTGGTTGAG TATGGACACT TCATTGCTAG
  GAAAACAAAA TCTTATTTCA CTAATATTTG ACTTCAATTG TTAATTTCAT GCAATATTAT
  GTATGACTCA GATCTCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39011857	mCV22951275	ABI	CRAMUS_MOUSE	f	SNP		G					T
ss61597395	NES17553368	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	G	G		T	G	T	T		G	T	T	G		G
ss137630563	ENSMUSSNP2793788	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss324008678	CHEV_12_37209475	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29195581					SNP	T	G	T	G	G	G	T	T	G	T	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597395	NES17553368	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36532887 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	400 bp downstream
Rr465183	regulatory region 465183	537 bp proximal