rs29196422 SNP Detail

Summary

• ID
  rs29196422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8053805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGCAAA TTATTAAAGA
  TTCTGAAAAT CCTGGTTATT AATGGTGCAT CTACAATAGC CTGAGTTTGC AAGGTATTCA
  AACTCAGCTA TGGAGAATCA GAACAGAGCA TTGAATGGAG GCACTTATTT CAAGAGATGT
  TTAGCCACAC ACCCCAATAG GGTAAATCCT AAATTCAGAA GCACACTGCT CACTCTGTTT
  Y
  TGTGTTAACA AAAATGTGTA CAATTTGTTA TTTATTTCAT GGAAAAAATT GTGGAGCATG
  AGCTAGGAAG ACAATGTTTT CTAAGTCAAT GATATAATTC TCACAATTCA GAATATAAAA
  GCCCTGTGTT ATATGGGCCC CTCAGTATGT TGTGGCTGAG GAGCACAACT GAACATGCCT
  GATTACTAGG ATAAAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss39014668	mCV24183309	ABI	CRAMUS_MOUSE	f	SNP	T	C		T		T
ss50958160	NES14429000	PERLEGEN	MM_PANEL2	f	SNP		C	C		C		T		C	C		C
ss137107600	ENSMUSSNP806006	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C				T
ss323884652	CHEV_12_8010611	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29196422					SNP	T	C	C	T	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958160	NES14429000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8053805 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112624	transcription start site region 112624	1952 bp downstream
Tssr112625	transcription start site region 112625	498 bp downstream
Tssr112626	transcription start site region 112626	1101 bp upstream
Tssr112627	transcription start site region 112627	1172 bp upstream