rs29196982 SNP Detail

Summary

• ID
  rs29196982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53860609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTTACG TAACTGTAGT
  GTGACCACCT TACTGCAGGA GGATAGAAAT CCTCCCAGAC AGAGCCCCCA GAGCAGCTTC
  AGTGTGACTT GCACCCTAAA CAGAGCCCAT CTCAAGAGCC AGCTTGGTGC CCTGATGAAG
  TTCGGAGTCT GTTGTATGGA AGTGTGCCTG CCTACACCGA AACTGCAGCC AGAAGCCCCC
  R
  ATTCTTCTCC TGACCACGCC AGAACACAGT GCTGTAGAAT ATGTGGTCAT GTCATGTATG
  CCTACCTATC TCTGCCTATT TCTTTCACAT ACATGTGTAC ACACACTTGC TTAAGTTCAG
  GGAGGGTCAT TCATCAGCCA TCTTTGCCAG CAGTGTACAA TTTCACCTTA AAATTATAAT
  TCAGAGGCCC TGTGACTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39013678	mCV22363438	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss137760089	ENSMUSSNP3844815	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29196982					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53860609 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	409 bp distal
Rr267638	regulatory region 267638	1010 bp distal