rs29196992 SNP Detail

Summary

• ID
  rs29196992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20972510 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGCA GAGGGATCAG AAAATAGCCT
  Y
  GTGAAGGAGA GCCTGTACTA TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39013100	mCV24837316	ABI	CRAMUS_MOUSE	f	SNP	T		T	C
ss137287052	ENSMUSSNP2063788	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29196992					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20972510 () rs orientation: reverse

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	1247 bp upstream
Cpgi4472	CpG island 4472	985 bp distal
Rr463638	regulatory region 463638	1465 bp distal
Rr463639	regulatory region 463639	757 bp distal
Rr463640	regulatory region 463640	1019 bp distal
Rr463641	regulatory region 463641	972 bp distal
Tssr115849	transcription start site region 115849	1426 bp upstream
Tssr115850	transcription start site region 115850	1273 bp upstream
Tssr115851	transcription start site region 115851	1236 bp upstream