rs29196998 SNP Detail

Summary

• ID
  rs29196998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTCTGTAT CTGTGTGTCT GTCTGAGTGT CTGTGTGTGT
  GGTGTGTGTC TGTATCTGTG TGTCTGTCTG AGTGTCTGTG TGTCTGTGTC TGTGTGTGTG
  R
  TGTGTGCGTG TGTGTGTGTG TGTGCGTGTG TGTGTGTGTG TGCGTGCGTG TGTGTGCGTG
  CGTGCGTGTG TGTGTGTGTG TGTGTGTGCA CATTCATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39014178	mCV22713262	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss324151909	CHEV_12_109177161	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29196998					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905210 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	621 bp downstream
Tssr117636	transcription start site region 117636	289 bp upstream
Tssr117637	transcription start site region 117637	260 bp upstream
Tssr117638	transcription start site region 117638	202 bp upstream
Tssr117639	transcription start site region 117639	183 bp upstream
Tssr117640	transcription start site region 117640	167 bp upstream
Tssr117641	transcription start site region 117641	150 bp upstream
Tssr117642	transcription start site region 117642	112 bp upstream
Tssr117643	transcription start site region 117643	within coordinates
Tssr117644	transcription start site region 117644	108 bp downstream
Tssr117645	transcription start site region 117645	139 bp downstream
Tssr117646	transcription start site region 117646	179 bp downstream
Tssr117647	transcription start site region 117647	195 bp downstream
Tssr117648	transcription start site region 117648	255 bp downstream
Tssr117649	transcription start site region 117649	281 bp downstream
Tssr117650	transcription start site region 117650	319 bp downstream