rs29197636 SNP Detail

Summary

• ID
  rs29197636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CTATTGACTG ACAGCTTATC
  R
  CTGTTTTTAA AAGAAAATTC TGTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39013583	mCV22302945	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss137401611	ENSMUSSNP4368356	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323938304	CHEV_12_25781874	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29197636					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	248 bp distal
Cpgi4501	CpG island 4501	1322 bp proximal
Gm59395	predicted gene, 59395	within coordinates
Id2	inhibitor of DNA binding 2	917 bp upstream
Rr403250	regulatory region 403250	646 bp downstream
Tssr112979	transcription start site region 112979	1270 bp downstream
Tssr112980	transcription start site region 112980	560 bp downstream
Tssr112981	transcription start site region 112981	522 bp downstream
Tssr112982	transcription start site region 112982	419 bp upstream
Tssr112983	transcription start site region 112983	1988 bp upstream
Tssr115884	transcription start site region 115884	1216 bp upstream
Tssr115885	transcription start site region 115885	913 bp upstream
Tssr115886	transcription start site region 115886	230 bp downstream