rs29198175 SNP Detail

Summary

• ID
  rs29198175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112791984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC TTTCTTATGC CTGCCTGCCT
  K
  CCTTCCTTTT AAGACTAGCA CCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39014005	mCV23889000	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss138728278	ENSMUSSNP2493421	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss324171471	CHEV_12_114066575	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29198175					SNP	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112791984 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	309 bp proximal
Gm52009	predicted gene, 52009	within coordinates
Gm56552	predicted gene, 56552	1221 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	471 bp upstream
Tssr3960	transcription start site region 3960	1092 bp downstream
Tssr115439	transcription start site region 115439	784 bp upstream
Tssr115440	transcription start site region 115440	1296 bp upstream
Tssr117911	transcription start site region 117911	661 bp downstream
Tssr117912	transcription start site region 117912	987 bp downstream
Tssr117913	transcription start site region 117913	1122 bp downstream