rs29198676 SNP Detail

Summary

• ID
  rs29198676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69837057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTTCTG CACTTGAACA
  CTACCCCATA GGAGCCTTCT CCAATCTTTC CAATTTTTTC ATATTTTTCC ATTACAGAGG
  AGGAGCAAGT CTTCTTGAGA ACGGATTTTC ATATAGTTTT TAAAGGTCGT TTATGAACTG
  ACCTCTCTCG AGCCTCATCA AGTAAGGGCT GTCGTCCGCG ATCTAGAGAA AACAAGGCGC
  R
  AGTTAAAGAA TAAGGATCAG CCAGGTGTGG ACTCCACCCC CACCCAGCAA TGACATCGCG
  GTCAAGGCTG GGAGTCTACA GGTGGCTGCC ATGGGTGACC TAATTTCAGT TGTCTGTTTC
  ATTCCCTCGA GCTAAAGATG TAGCCAGCAT CCAAAAACGA GCCGAGCTGT AAGATAATCT
  ATCTTTTTAA CGTTATGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39012314	mCV24218157	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss51016669	NES14398524	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G	G	G	G		G	G	G		A
ss137860597	ENSMUSSNP5277122	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss324085694	CHEV_12_70891270	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29198676					SNP	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016669	NES14398524	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69837057 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	61 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	189 bp proximal
Rr257091	regulatory region 257091	1544 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	10 bp upstream
Tssr116528	transcription start site region 116528	7 bp upstream
Tssr116529	transcription start site region 116529	within coordinates
Tssr116530	transcription start site region 116530	322 bp downstream
Tssr116531	transcription start site region 116531	377 bp downstream
Tssr116532	transcription start site region 116532	946 bp downstream
Tssr116533	transcription start site region 116533	1011 bp downstream
Tssr116534	transcription start site region 116534	1028 bp downstream
Tssr116535	transcription start site region 116535	1042 bp downstream
Tssr116536	transcription start site region 116536	1070 bp downstream