rs29198978 SNP Detail

Summary

• ID
  rs29198978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51741588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATTAT TGCTGAGAGT
  CTGAACCCTG AGTCATGTGA AGAATTCTAG GCTAGACTAA AGTACACAGT GAGACCTTGT
  TTTGTTGTTG TTTGGTTTGA TTTGGTTAAA AAAACAATGC CTATATTTTT GATCAGCTTA
  GTTTTTAGGG CACTACTTTG TTTTCTATCC TTACAAGTAA TATTTGAACC AATATGCTTA
  Y
  TCAGCTGGAC TTGTCGTATT TAATTTACAT GAATTATGAA AGCCAAAGTA TACCAAAGAA
  TTCCAGGCTT TTAAGTAAGT TGGGAATAGA CAATACTCAG ATACCTTCTT ATCAGTTATT
  TCAAATGTGA CTATGAAAAG CTTGTACTCC ACTCTGCCTT TGAGAACCAA GTAGCTACTT
  GTGATTATCT AAGCACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39015295	mCV24841402	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss137724509	ENSMUSSNP686544	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C		T
ss324037235	CHEV_12_52795792	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29198978					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51741588 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Rr256575	regulatory region 256575	613 bp proximal
Rr265419	regulatory region 265419	1587 bp distal